Sample information

Sample ID SRR9687637
Sample Accession SRR9687637 Sequencing Platform OXFORD_NANOPORE Read Count 27554 Base Count 49785080
Bioproject ID PRJNA554461 Scientific Name human lung metagenome
Read Length N50 1970 Reads < 1 kb (%) 0.0921463308412572
Sampling Context endotracheal aspirate Host Health / Disease pneumonia
Study Title Metagenomic Identification of Severe Pneumonia Pathogens in Mechanically-Ventilated Patients

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening

Not Available


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Genome Bin ID Quality Tier Completeness (%) Contamination (%) Genome Size (Mb) N50 (kb) Contig Count More Information GC Content (%) Taxonomy Closest Reference

Genome bin quality distribution

Phylogenomic tree of genome bins

Not Available


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling