NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,806.8 |
| Mean read quality |
9.6 |
| Median read length |
1,734.0 |
| Median read quality |
10.4 |
| Number of reads |
27,554.0 |
| Read length N50 |
1,970.0 |
| STDEV read length |
699.6 |
| Total bases |
49,785,080.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
27554 (100.0%) 49.8Mb |
| >Q7 |
27533 (99.9%) 49.8Mb |
| >Q10 |
17152 (62.2%) 31.2Mb |
| >Q12 |
2014 (7.3%) 3.3Mb |
| >Q15 |
2 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (68) |
| 2 |
15.2 (950) |
| 3 |
14.9 (1552) |
| 4 |
14.8 (38) |
| 5 |
14.6 (1768) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7649 (10.1) |
| 2 |
7232 (9.9) |
| 3 |
6418 (10.3) |
| 4 |
6239 (10.3) |
| 5 |
6019 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot