Sample information

Sample ID SRR8641381
Sample Accession SRR8641381 Sequencing Platform OXFORD_NANOPORE Read Count 377046 Base Count 315210232
Bioproject ID PRJNA524377 Scientific Name Pneumocystis jirovecii
Read Length N50 877 Reads < 1 kb (%) 0.77554728070315
Sampling Context bronchoalveolar lavage fluid Host Health / Disease pneumocystis jirovecii pneumonia
Study Title Clinical metagenomic approach for pathogen recovery from bronchoalveolar lavage using MinION

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Not Available

Genome bin quality distribution

Not Available

Phylogenomic tree of genome bins

Not Available


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling