NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
836.0 |
| Mean read quality |
8.6 |
| Median read length |
686.0 |
| Median read quality |
9.1 |
| Number of reads |
377,046.0 |
| Read length N50 |
877.0 |
| STDEV read length |
529.2 |
| Total bases |
315,210,232.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
377046 (100.0%) 315.2Mb |
| >Q7 |
376898 (100.0%) 315.1Mb |
| >Q10 |
96820 (25.7%) 82.6Mb |
| >Q12 |
2158 (0.6%) 1.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.8 (384) |
| 2 |
13.6 (699) |
| 3 |
13.4 (523) |
| 4 |
13.3 (612) |
| 5 |
13.3 (441) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18713 (10.5) |
| 2 |
18389 (10.2) |
| 3 |
17030 (11.2) |
| 4 |
16429 (10.9) |
| 5 |
16265 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot