Sample information

Sample ID SRR8641380
Sample Accession SRR8641380 Sequencing Platform OXFORD_NANOPORE Read Count 524331 Base Count 381244130
Bioproject ID PRJNA524377 Scientific Name Pneumocystis jirovecii
Read Length N50 761 Reads < 1 kb (%) 0.843253593626927
Sampling Context bronchoalveolar lavage fluid Host Health / Disease pneumocystis jirovecii pneumonia
Study Title Clinical metagenomic approach for pathogen recovery from bronchoalveolar lavage using MinION

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Genome Bin ID Quality Tier Completeness (%) Contamination (%) Genome Size (Mb) N50 (kb) Contig Count More Information GC Content (%) Taxonomy Closest Reference

Genome bin quality distribution

Phylogenomic tree of genome bins

Not Available


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling