NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
727.1 |
| Mean read quality |
9.1 |
| Median read length |
596.0 |
| Median read quality |
9.8 |
| Number of reads |
524,331.0 |
| Read length N50 |
761.0 |
| STDEV read length |
473.7 |
| Total bases |
381,244,130.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
524331 (100.0%) 381.2Mb |
| >Q7 |
524114 (100.0%) 381.1Mb |
| >Q10 |
230794 (44.0%) 174.1Mb |
| >Q12 |
3759 (0.7%) 2.9Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.3 (511) |
| 2 |
13.4 (428) |
| 3 |
13.4 (390) |
| 4 |
13.4 (1112) |
| 5 |
13.3 (372) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
46789 (11.2) |
| 2 |
24416 (9.5) |
| 3 |
21287 (9.8) |
| 4 |
20668 (10.9) |
| 5 |
18416 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot