Sample information Sequencing quality control
Assembly-free analysis Read-level taxonomic profiling Gene screening
Assembly-based analysis Assembly quality assessment Genome bin quality & Taxonomic assignment Genome bin quality distribution Phylogenomic tree of genome bins Predicted ORF metrics Gene-level taxonomic profiling

Sample information

Sample ID SRR8641379
Sample Accession SRR8641379 Sequencing Platform OXFORD_NANOPORE Read Count 71247 Base Count 46726179
Bioproject ID PRJNA524377 Scientific Name Pneumocystis jirovecii
Read Length N50 667 Reads < 1 kb (%) 0.892234058977922
Sampling Context sputum Host Health / Disease pneumocystis jirovecii pneumonia
Study Title Clinical metagenomic approach for pathogen recovery from bronchoalveolar lavage using MinION

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening

Not Available
Not Available
Not Available


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Not Available

Genome bin quality distribution

Not Available

Phylogenomic tree of genome bins

Not Available


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling