NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
655.8 |
| Mean read quality |
10.3 |
| Median read length |
555.0 |
| Median read quality |
11.4 |
| Number of reads |
71,247.0 |
| Read length N50 |
667.0 |
| STDEV read length |
394.8 |
| Total bases |
46,726,179.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
71247 (100.0%) 46.7Mb |
| >Q7 |
71246 (100.0%) 46.7Mb |
| >Q10 |
55813 (78.3%) 37.5Mb |
| >Q12 |
23581 (33.1%) 16.8Mb |
| >Q15 |
24 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (531) |
| 2 |
16.0 (513) |
| 3 |
15.9 (461) |
| 4 |
15.6 (969) |
| 5 |
15.5 (407) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11476 (7.2) |
| 2 |
10474 (10.3) |
| 3 |
10020 (13.3) |
| 4 |
9875 (12.2) |
| 5 |
9767 (12.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot