Sample information

Sample ID SRR18531812_SRR18531790
Sample Accession SRR18531812 Sequencing Platform ILLUMINA Read Count 231520 Base Count 66764700
Sample Accession SRR18531790 Sequencing Platform OXFORD_NANOPORE Read Count 48819 Base Count 127977813
Bioproject ID PRJNA821338 Scientific Name metagenome
Read Length N50 1940 Reads < 1 kb (%) 0.173395604170507
Sampling Context bronchoalveolar lavage fluid Host Health / Disease suspected lower respiratory infection
Study Title Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adaptive sampling method

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Not Available

Genome bin quality distribution

Not Available

Phylogenomic tree of genome bins

Not Available


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling

Gene functional annotation profiles

Resistome annotation profiles