NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
694.1 |
| Mean read quality |
9.8 |
| Median read length |
248.0 |
| Median read quality |
10.5 |
| Number of reads |
62,115.0 |
| Read length N50 |
1,940.0 |
| STDEV read length |
943.3 |
| Total bases |
43,113,194.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
61888 (99.6%) 43.1Mb |
| >Q7 |
60647 (97.6%) 43.0Mb |
| >Q10 |
40134 (64.6%) 25.9Mb |
| >Q12 |
13368 (21.5%) 1.3Mb |
| >Q15 |
4022 (6.5%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.8 (17) |
| 2 |
31.6 (16) |
| 3 |
30.9 (18) |
| 4 |
30.4 (16) |
| 5 |
29.8 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7342 (8.0) |
| 2 |
6984 (8.1) |
| 3 |
6666 (9.0) |
| 4 |
5840 (10.1) |
| 5 |
5702 (8.5) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
694.1 |
| Mean read quality |
9.8 |
| Median read length |
248.0 |
| Median read quality |
10.5 |
| Number of reads |
62,111.0 |
| Read length N50 |
1,940.0 |
| STDEV read length |
943.4 |
| Total bases |
43,113,127.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
61884 (99.6%) 43.1Mb |
| >Q7 |
60643 (97.6%) 43.0Mb |
| >Q10 |
40130 (64.6%) 25.9Mb |
| >Q12 |
13364 (21.5%) 1.3Mb |
| >Q15 |
4018 (6.5%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.8 (20) |
| 2 |
28.4 (166) |
| 3 |
28.1 (36) |
| 4 |
28.0 (16) |
| 5 |
27.5 (21) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7342 (8.0) |
| 2 |
6984 (8.1) |
| 3 |
6666 (9.0) |
| 4 |
5840 (10.1) |
| 5 |
5702 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot