Sample information

Sample ID SRR18531806_SRR18531807
Sample Accession SRR18531806 Sequencing Platform ILLUMINA Read Count 992715 Base Count 290370660
Sample Accession SRR18531807 Sequencing Platform OXFORD_NANOPORE Read Count 44444 Base Count 153554064
Bioproject ID PRJNA821338 Scientific Name metagenome
Read Length N50 3145 Reads < 1 kb (%) 0.0971784717847178
Sampling Context bronchoalveolar lavage fluid Host Health / Disease suspected lower respiratory infection
Study Title Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adaptive sampling method

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Genome Bin ID Quality Tier Completeness (%) Contamination (%) Genome Size (Mb) N50 (kb) Contig Count More Information GC Content (%) Taxonomy Closest Reference

Genome bin quality distribution

Phylogenomic tree of genome bins


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling

Gene functional annotation profiles

Resistome annotation profiles