NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
3,261.8 |
| Mean read quality |
10.3 |
| Median read length |
2,530.0 |
| Median read quality |
11.0 |
| Number of reads |
44,531.0 |
| Read length N50 |
3,145.0 |
| STDEV read length |
4,424.4 |
| Total bases |
145,252,228.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
44528 (100.0%) 145.2Mb |
| >Q7 |
44484 (99.9%) 145.2Mb |
| >Q10 |
36316 (81.6%) 122.0Mb |
| >Q12 |
6698 (15.0%) 39.6Mb |
| >Q15 |
827 (1.9%) 4.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.6 (16) |
| 2 |
30.8 (16) |
| 3 |
29.2 (17) |
| 4 |
28.6 (16) |
| 5 |
27.8 (22) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
89504 (8.1) |
| 2 |
83395 (12.0) |
| 3 |
68424 (7.5) |
| 4 |
64463 (13.8) |
| 5 |
62835 (12.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
3,262.0 |
| Mean read quality |
10.3 |
| Median read length |
2,530.0 |
| Median read quality |
11.0 |
| Number of reads |
44,529.0 |
| Read length N50 |
3,145.0 |
| STDEV read length |
4,424.5 |
| Total bases |
145,252,196.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
44526 (100.0%) 145.2Mb |
| >Q7 |
44482 (99.9%) 145.2Mb |
| >Q10 |
36314 (81.6%) 122.0Mb |
| >Q12 |
6696 (15.0%) 39.6Mb |
| >Q15 |
825 (1.9%) 4.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.2 (17) |
| 2 |
28.6 (16) |
| 3 |
27.8 (22) |
| 4 |
26.5 (16) |
| 5 |
25.7 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
89504 (8.1) |
| 2 |
83395 (12.0) |
| 3 |
68424 (7.5) |
| 4 |
64463 (13.8) |
| 5 |
62835 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot