Sample information

Sample ID SRR18531799_SRR18531800
Sample Accession SRR18531799 Sequencing Platform ILLUMINA Read Count 402196 Base Count 116579766
Sample Accession SRR18531800 Sequencing Platform OXFORD_NANOPORE Read Count 16633 Base Count 36416525
Bioproject ID PRJNA821338 Scientific Name metagenome
Read Length N50 2153 Reads < 1 kb (%) 0.351169362111465
Sampling Context bronchoalveolar lavage fluid Host Health / Disease suspected lower respiratory infection
Study Title Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adaptive sampling method

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Genome Bin ID Quality Tier Completeness (%) Contamination (%) Genome Size (Mb) N50 (kb) Contig Count More Information GC Content (%) Taxonomy Closest Reference

Genome bin quality distribution

Phylogenomic tree of genome bins


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling

Gene functional annotation profiles

Resistome annotation profiles