NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,306.9 |
| Mean read quality |
9.8 |
| Median read length |
718.0 |
| Median read quality |
10.4 |
| Number of reads |
18,882.0 |
| Read length N50 |
2,153.0 |
| STDEV read length |
2,665.9 |
| Total bases |
24,677,698.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
18850 (99.8%) 24.6Mb |
| >Q7 |
18615 (98.6%) 24.6Mb |
| >Q10 |
11645 (61.7%) 16.4Mb |
| >Q12 |
4110 (21.8%) 6.8Mb |
| >Q15 |
987 (5.2%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
37.8 (22) |
| 2 |
36.5 (16) |
| 3 |
36.2 (16) |
| 4 |
34.8 (16) |
| 5 |
34.8 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
51370 (9.7) |
| 2 |
49825 (8.4) |
| 3 |
48550 (13.0) |
| 4 |
47547 (12.9) |
| 5 |
44299 (12.9) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,307.8 |
| Mean read quality |
9.8 |
| Median read length |
719.0 |
| Median read quality |
10.4 |
| Number of reads |
18,869.0 |
| Read length N50 |
2,153.0 |
| STDEV read length |
2,666.6 |
| Total bases |
24,677,489.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
18837 (99.8%) 24.6Mb |
| >Q7 |
18602 (98.6%) 24.6Mb |
| >Q10 |
11632 (61.6%) 16.4Mb |
| >Q12 |
4097 (21.7%) 6.8Mb |
| >Q15 |
974 (5.2%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
37.8 (22) |
| 2 |
29.9 (18) |
| 3 |
29.6 (17) |
| 4 |
29.6 (16) |
| 5 |
29.5 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
51370 (9.7) |
| 2 |
49825 (8.4) |
| 3 |
48550 (13.0) |
| 4 |
47547 (12.9) |
| 5 |
44299 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot