Sample information

Sample ID SRR18531797_SRR18531798
Sample Accession SRR18531797 Sequencing Platform ILLUMINA Read Count 409827 Base Count 119038798
Sample Accession SRR18531798 Sequencing Platform OXFORD_NANOPORE Read Count 13510 Base Count 38874203
Bioproject ID PRJNA821338 Scientific Name metagenome
Read Length N50 3406 Reads < 1 kb (%) 0.24500370096225
Sampling Context bronchoalveolar lavage fluid Host Health / Disease suspected lower respiratory infection
Study Title Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adaptive sampling method

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Genome Bin ID Quality Tier Completeness (%) Contamination (%) Genome Size (Mb) N50 (kb) Contig Count More Information GC Content (%) Taxonomy Closest Reference

Genome bin quality distribution

Phylogenomic tree of genome bins


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling

Gene functional annotation profiles

Resistome annotation profiles