NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,186.4 |
| Mean read quality |
10.1 |
| Median read length |
2,074.0 |
| Median read quality |
10.9 |
| Number of reads |
14,841.0 |
| Read length N50 |
3,406.0 |
| STDEV read length |
2,343.5 |
| Total bases |
32,447,799.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
14833 (99.9%) 32.4Mb |
| >Q7 |
14769 (99.5%) 32.4Mb |
| >Q10 |
11433 (77.0%) 26.1Mb |
| >Q12 |
2345 (15.8%) 3.2Mb |
| >Q15 |
440 (3.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.4 (22) |
| 2 |
31.6 (16) |
| 3 |
31.0 (16) |
| 4 |
29.3 (16) |
| 5 |
28.4 (26) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
70118 (10.8) |
| 2 |
59873 (12.4) |
| 3 |
55341 (11.4) |
| 4 |
49502 (12.5) |
| 5 |
49028 (13.0) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,186.7 |
| Mean read quality |
10.1 |
| Median read length |
2,075.0 |
| Median read quality |
10.9 |
| Number of reads |
14,839.0 |
| Read length N50 |
3,406.0 |
| STDEV read length |
2,343.5 |
| Total bases |
32,447,767.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
14831 (99.9%) 32.4Mb |
| >Q7 |
14767 (99.5%) 32.4Mb |
| >Q10 |
11431 (77.0%) 26.1Mb |
| >Q12 |
2343 (15.8%) 3.2Mb |
| >Q15 |
438 (3.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.4 (22) |
| 2 |
29.3 (16) |
| 3 |
28.4 (26) |
| 4 |
28.2 (17) |
| 5 |
25.4 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
70118 (10.8) |
| 2 |
59873 (12.4) |
| 3 |
55341 (11.4) |
| 4 |
49502 (12.5) |
| 5 |
49028 (13.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot