Sample information

Sample ID SRR18531795_SRR18531802
Sample Accession SRR18531795 Sequencing Platform ILLUMINA Read Count 9400059 Base Count 2721679124
Sample Accession SRR18531802 Sequencing Platform OXFORD_NANOPORE Read Count 52450 Base Count 230222754
Bioproject ID PRJNA821338 Scientific Name metagenome
Read Length N50 6839 Reads < 1 kb (%) 0.149170638703527
Sampling Context bronchoalveolar lavage fluid Host Health / Disease suspected lower respiratory infection
Study Title Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adaptive sampling method

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Genome Bin ID Quality Tier Completeness (%) Contamination (%) Genome Size (Mb) N50 (kb) Contig Count More Information GC Content (%) Taxonomy Closest Reference

Genome bin quality distribution

Phylogenomic tree of genome bins


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling

Gene functional annotation profiles

Resistome annotation profiles