NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,322.6 |
| Mean read quality |
10.2 |
| Median read length |
2,737.0 |
| Median read quality |
10.8 |
| Number of reads |
52,450.0 |
| Read length N50 |
6,839.0 |
| STDEV read length |
5,727.6 |
| Total bases |
226,721,320.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
52450 (100.0%) 226.7Mb |
| >Q7 |
52448 (100.0%) 226.7Mb |
| >Q10 |
36847 (70.3%) 173.3Mb |
| >Q12 |
15793 (30.1%) 80.3Mb |
| >Q15 |
2576 (4.9%) 10.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.0 (4754) |
| 2 |
24.5 (170) |
| 3 |
23.8 (195) |
| 4 |
23.0 (203) |
| 5 |
22.7 (280) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
97940 (9.9) |
| 2 |
90283 (14.1) |
| 3 |
78087 (15.3) |
| 4 |
74036 (10.2) |
| 5 |
68601 (14.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot