Sample information

Sample ID SRR18531793_SRR18531794
Sample Accession SRR18531793 Sequencing Platform ILLUMINA Read Count 1948598 Base Count 573402017
Sample Accession SRR18531794 Sequencing Platform OXFORD_NANOPORE Read Count 71075 Base Count 293814341
Bioproject ID PRJNA821338 Scientific Name metagenome
Read Length N50 4307 Reads < 1 kb (%) 0.082813928948294
Sampling Context bronchoalveolar lavage fluid Host Health / Disease suspected lower respiratory infection
Study Title Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adaptive sampling method

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Genome Bin ID Quality Tier Completeness (%) Contamination (%) Genome Size (Mb) N50 (kb) Contig Count More Information GC Content (%) Taxonomy Closest Reference

Genome bin quality distribution

Phylogenomic tree of genome bins


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling

Gene functional annotation profiles

Resistome annotation profiles