NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,037.0 |
| Mean read quality |
9.9 |
| Median read length |
3,181.0 |
| Median read quality |
10.5 |
| Number of reads |
71,075.0 |
| Read length N50 |
4,307.0 |
| STDEV read length |
4,958.2 |
| Total bases |
286,927,526.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
71073 (100.0%) 286.9Mb |
| >Q7 |
71046 (100.0%) 286.9Mb |
| >Q10 |
47726 (67.1%) 204.8Mb |
| >Q12 |
14614 (20.6%) 75.3Mb |
| >Q15 |
1052 (1.5%) 3.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
26.7 (18) |
| 2 |
25.3 (144) |
| 3 |
24.5 (16) |
| 4 |
23.6 (20) |
| 5 |
22.8 (137) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
99661 (8.2) |
| 2 |
89629 (8.7) |
| 3 |
82124 (11.0) |
| 4 |
77284 (7.6) |
| 5 |
72053 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot