Sample information

Sample ID SRR12401422_SRR12401426
Sample Accession SRR12401422 Sequencing Platform ILLUMINA Read Count 9588248 Base Count 1441192857
Sample Accession SRR12401426 Sequencing Platform OXFORD_NANOPORE Read Count 104368 Base Count 511243350
Bioproject ID PRJNA655185 Scientific Name human gut metagenome
Read Length N50 5841 Reads < 1 kb (%) 0.00880538095968113
Sampling Context rectal swab Host Health / Disease vancomycin-resistant Enterococci infection
Study Title Metagenomic Next-Generation Sequencing of Rectal Swabs for ARO Surveillance

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Genome Bin ID Quality Tier Completeness (%) Contamination (%) Genome Size (Mb) N50 (kb) Contig Count More Information GC Content (%) Taxonomy Closest Reference

Genome bin quality distribution

Phylogenomic tree of genome bins


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling

Gene functional annotation profiles

Resistome annotation profiles