NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,499.5 |
| Mean read quality |
8.4 |
| Median read length |
4,258.0 |
| Median read quality |
9.3 |
| Number of reads |
106,842.0 |
| Read length N50 |
5,841.0 |
| STDEV read length |
2,688.3 |
| Total bases |
480,736,553.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
106658 (99.8%) 479.1Mb |
| >Q7 |
98680 (92.4%) 447.5Mb |
| >Q10 |
32660 (30.6%) 156.6Mb |
| >Q12 |
429 (0.4%) 1.5Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.0 (16) |
| 2 |
14.4 (17) |
| 3 |
14.3 (37) |
| 4 |
14.2 (16) |
| 5 |
14.2 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
230746 (5.2) |
| 2 |
114668 (5.1) |
| 3 |
105068 (4.7) |
| 4 |
75688 (5.1) |
| 5 |
62618 (4.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot