Sample information

Sample ID SRR12401420_SRR12401430
Sample Accession SRR12401420 Sequencing Platform ILLUMINA Read Count 15023922 Base Count 2212330804
Sample Accession SRR12401430 Sequencing Platform OXFORD_NANOPORE Read Count 23801 Base Count 110669732
Bioproject ID PRJNA655185 Scientific Name human gut metagenome
Read Length N50 5817 Reads < 1 kb (%) 0.0369732364186379
Sampling Context rectal swab Host Health / Disease vancomycin-resistant Enterococci infection
Study Title Metagenomic Next-Generation Sequencing of Rectal Swabs for ARO Surveillance

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Genome Bin ID Quality Tier Completeness (%) Contamination (%) Genome Size (Mb) N50 (kb) Contig Count More Information GC Content (%) Taxonomy Closest Reference

Genome bin quality distribution

Phylogenomic tree of genome bins


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling

Gene functional annotation profiles

Resistome annotation profiles