NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,379.6 |
| Mean read quality |
7.1 |
| Median read length |
4,174.5 |
| Median read quality |
7.7 |
| Number of reads |
24,086.0 |
| Read length N50 |
5,817.0 |
| STDEV read length |
2,532.9 |
| Total bases |
105,486,250.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
24046 (99.8%) 105.4Mb |
| >Q7 |
17844 (74.1%) 79.6Mb |
| >Q10 |
622 (2.6%) 2.0Mb |
| >Q12 |
8 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.1 (4939) |
| 2 |
12.8 (802) |
| 3 |
12.3 (177) |
| 4 |
12.3 (1093) |
| 5 |
12.2 (523) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
22882 (4.9) |
| 2 |
22506 (5.0) |
| 3 |
22267 (6.6) |
| 4 |
21296 (5.2) |
| 5 |
19177 (6.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot