Sample information

Sample ID ERR5889218
Sample Accession ERR5889218 Sequencing Platform OXFORD_NANOPORE Read Count 218260 Base Count 519776041
Bioproject ID PRJEB41184 Scientific Name lung metagenome
Read Length N50 2585 Reads < 1 kb (%) 0.0452350407770549
Sampling Context respiratory tract Host Health / Disease COVID-19
Study Title Evaluating the potential for respiratory metagenomics to improve treatment of secondary infection and detection of nosocomial transmission on expanded COVID-19 intensive care units

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Genome Bin ID Quality Tier Completeness (%) Contamination (%) Genome Size (Mb) N50 (kb) Contig Count More Information GC Content (%) Taxonomy Closest Reference

Genome bin quality distribution

Phylogenomic tree of genome bins


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling