NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,381.5 |
| Mean read quality |
11.5 |
| Median read length |
2,361.0 |
| Median read quality |
12.7 |
| Number of reads |
218,260.0 |
| Read length N50 |
2,585.0 |
| STDEV read length |
808.2 |
| Total bases |
519,776,041.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
218260 (100.0%) 519.8Mb |
| >Q7 |
218260 (100.0%) 519.8Mb |
| >Q10 |
192962 (88.4%) 463.6Mb |
| >Q12 |
140523 (64.4%) 343.1Mb |
| >Q15 |
5776 (2.6%) 14.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.8 (2443) |
| 2 |
17.4 (2131) |
| 3 |
17.3 (2150) |
| 4 |
17.1 (1858) |
| 5 |
16.9 (2198) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12609 (9.3) |
| 2 |
12258 (9.1) |
| 3 |
11868 (7.5) |
| 4 |
11701 (9.5) |
| 5 |
11020 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot