Sample information Sequencing quality control
Assembly-free analysis Read-level taxonomic profiling Gene screening
Assembly-based analysis Assembly quality assessment Genome bin quality & Taxonomic assignment Genome bin quality distribution Phylogenomic tree of genome bins Predicted ORF metrics Gene-level taxonomic profiling

Sample information

Sample ID ERR5888896
Sample Accession ERR5888896 Sequencing Platform OXFORD_NANOPORE Read Count 206 Base Count 1027482
Bioproject ID PRJEB41184 Scientific Name lung metagenome
Read Length N50 6183 Reads < 1 kb (%) 0.0388349514563107
Sampling Context respiratory tract Host Health / Disease COVID-19
Study Title Evaluating the potential for respiratory metagenomics to improve treatment of secondary infection and detection of nosocomial transmission on expanded COVID-19 intensive care units

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening

Not Available


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Not Available

Genome bin quality distribution

Not Available

Phylogenomic tree of genome bins

Not Available


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling