NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,987.8 |
| Mean read quality |
11.9 |
| Median read length |
5,126.0 |
| Median read quality |
13.5 |
| Number of reads |
206.0 |
| Read length N50 |
6,183.0 |
| STDEV read length |
1,794.6 |
| Total bases |
1,027,482.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
206 (100.0%) 1.0Mb |
| >Q7 |
206 (100.0%) 1.0Mb |
| >Q10 |
185 (89.8%) 0.9Mb |
| >Q12 |
154 (74.8%) 0.8Mb |
| >Q15 |
14 (6.8%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (5323) |
| 2 |
15.9 (5311) |
| 3 |
15.6 (4303) |
| 4 |
15.6 (6704) |
| 5 |
15.6 (7151) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10721 (14.0) |
| 2 |
7194 (14.4) |
| 3 |
7151 (15.6) |
| 4 |
6789 (10.7) |
| 5 |
6774 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot