Sample information

Sample ID ERR5260563
Sample Accession ERR5260563 Sequencing Platform OXFORD_NANOPORE Read Count 26986 Base Count 119374024
Bioproject ID PRJEB42910 Scientific Name metagenome
Read Length N50 4997 Reads < 1 kb (%) 0.0161935818572593
Sampling Context orthopedic implant,not otherwise specified sonication fluid Host Health / Disease prosthetic joint infection
Study Title Optimization of prosthetic joint infection sample DNA extraction for Nanopore sequencing

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Genome Bin ID Quality Tier Completeness (%) Contamination (%) Genome Size (Mb) N50 (kb) Contig Count More Information GC Content (%) Taxonomy Closest Reference

Genome bin quality distribution

Phylogenomic tree of genome bins


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling