NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,423.6 |
| Mean read quality |
11.3 |
| Median read length |
4,292.0 |
| Median read quality |
12.4 |
| Number of reads |
26,986.0 |
| Read length N50 |
4,997.0 |
| STDEV read length |
1,688.7 |
| Total bases |
119,374,024.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
26986 (100.0%) 119.4Mb |
| >Q7 |
26930 (99.8%) 119.2Mb |
| >Q10 |
23665 (87.7%) 105.6Mb |
| >Q12 |
16142 (59.8%) 73.0Mb |
| >Q15 |
313 (1.2%) 1.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (2965) |
| 2 |
16.5 (5395) |
| 3 |
16.5 (903) |
| 4 |
16.3 (5123) |
| 5 |
16.2 (2201) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10892 (8.4) |
| 2 |
10347 (11.2) |
| 3 |
10316 (13.0) |
| 4 |
10235 (10.7) |
| 5 |
9903 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot