Sample information Sequencing quality control
Assembly-free analysis Read-level taxonomic profiling Gene screening
Assembly-based analysis Assembly quality assessment Genome bin quality & Taxonomic assignment Genome bin quality distribution Phylogenomic tree of genome bins Predicted ORF metrics Gene-level taxonomic profiling

Sample information

Sample ID ERR5260541
Sample Accession ERR5260541 Sequencing Platform OXFORD_NANOPORE Read Count 14336 Base Count 63654522
Bioproject ID PRJEB42910 Scientific Name metagenome
Read Length N50 4853 Reads < 1 kb (%) 0.0198102678571429
Sampling Context orthopedic implant,not otherwise specified sonication fluid Host Health / Disease prosthetic joint infection
Study Title Optimization of prosthetic joint infection sample DNA extraction for Nanopore sequencing

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening

Not Available
Not Available
Not Available


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Not Available

Genome bin quality distribution

Not Available

Phylogenomic tree of genome bins

Not Available


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling