NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,440.2 |
| Mean read quality |
11.2 |
| Median read length |
4,358.0 |
| Median read quality |
12.4 |
| Number of reads |
14,336.0 |
| Read length N50 |
4,853.0 |
| STDEV read length |
1,563.0 |
| Total bases |
63,654,522.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
14336 (100.0%) 63.7Mb |
| >Q7 |
14302 (99.8%) 63.5Mb |
| >Q10 |
12230 (85.3%) 54.9Mb |
| >Q12 |
8445 (58.9%) 38.3Mb |
| >Q15 |
364 (2.5%) 1.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.3 (259) |
| 2 |
16.9 (5311) |
| 3 |
16.9 (4711) |
| 4 |
16.7 (5338) |
| 5 |
16.6 (3765) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10071 (8.6) |
| 2 |
8790 (7.7) |
| 3 |
8779 (11.1) |
| 4 |
8702 (10.4) |
| 5 |
8670 (14.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot