Sample information

Sample ID ERR12018983
Sample Accession ERR12018983 Sequencing Platform OXFORD_NANOPORE Read Count 8384 Base Count 21648376
Bioproject ID PRJEB61294 Scientific Name metagenome
Read Length N50 3220 Reads < 1 kb (%) 0.148735687022901
Sampling Context bronchoalveolar lavage fluid Host Health / Disease group A streptococcal bacteremia infection;right-sided empyema
Study Title Viral, Bacterial and Fungal Metagenomic protocol

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Not Available

Gene screening


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Genome Bin ID Quality Tier Completeness (%) Contamination (%) Genome Size (Mb) N50 (kb) Contig Count More Information GC Content (%) Taxonomy Closest Reference

Genome bin quality distribution

Phylogenomic tree of genome bins


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling