NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,582.1 |
| Mean read quality |
12.5 |
| Median read length |
2,654.0 |
| Median read quality |
13.5 |
| Number of reads |
8,384.0 |
| Read length N50 |
3,220.0 |
| STDEV read length |
1,244.7 |
| Total bases |
21,648,376.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8384 (100.0%) 21.6Mb |
| >Q7 |
8384 (100.0%) 21.6Mb |
| >Q10 |
8119 (96.8%) 21.0Mb |
| >Q12 |
6554 (78.2%) 17.4Mb |
| >Q15 |
1504 (17.9%) 4.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.6 (4260) |
| 2 |
19.3 (4236) |
| 3 |
18.8 (3722) |
| 4 |
18.5 (2274) |
| 5 |
18.4 (2316) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7214 (14.1) |
| 2 |
6614 (11.6) |
| 3 |
6578 (10.0) |
| 4 |
6529 (14.5) |
| 5 |
6508 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot