Sample information

Sample ID ERR10961071
Sample Accession ERR10961071 Sequencing Platform OXFORD_NANOPORE Read Count 700 Base Count 2705715
Bioproject ID PRJEB59568 Scientific Name lung metagenome
Read Length N50 3952 Reads < 1 kb (%) 0.00428571428571429
Sampling Context pleural fluid Host Health / Disease suspected lower respiratory infection
Study Title Feasibility and clinical impact of providing a daily respiratory metagenomic service for intensive care unit patients

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening

Not Available


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Not Available

Genome bin quality distribution

Not Available

Phylogenomic tree of genome bins

Not Available


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling