NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,865.3 |
| Mean read quality |
10.4 |
| Median read length |
3,794.0 |
| Median read quality |
11.3 |
| Number of reads |
700.0 |
| Read length N50 |
3,952.0 |
| STDEV read length |
1,066.2 |
| Total bases |
2,705,715.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
700 (100.0%) 2.7Mb |
| >Q7 |
700 (100.0%) 2.7Mb |
| >Q10 |
551 (78.7%) 2.1Mb |
| >Q12 |
199 (28.4%) 0.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.7 (4016) |
| 2 |
14.5 (3871) |
| 3 |
14.5 (4888) |
| 4 |
14.4 (4890) |
| 5 |
14.2 (5246) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9577 (11.4) |
| 2 |
9311 (8.5) |
| 3 |
7867 (13.0) |
| 4 |
7806 (12.3) |
| 5 |
7655 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot