Sample information Sequencing quality control
Assembly-free analysis Read-level taxonomic profiling Gene screening
Assembly-based analysis Assembly quality assessment Genome bin quality & Taxonomic assignment Genome bin quality distribution Phylogenomic tree of genome bins Predicted ORF metrics Gene-level taxonomic profiling

Sample information

Sample ID ERR10960988
Sample Accession ERR10960988 Sequencing Platform OXFORD_NANOPORE Read Count 1395 Base Count 4409908
Bioproject ID PRJEB59568 Scientific Name lung metagenome
Read Length N50 3339 Reads < 1 kb (%) 0.00931899641577061
Sampling Context bronchoalveolar lavage fluid Host Health / Disease suspected lower respiratory infection
Study Title Feasibility and clinical impact of providing a daily respiratory metagenomic service for intensive care unit patients

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening

Not Available
Not Available


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Not Available

Genome bin quality distribution

Not Available

Phylogenomic tree of genome bins

Not Available


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling