NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,161.2 |
| Mean read quality |
11.9 |
| Median read length |
3,076.0 |
| Median read quality |
12.9 |
| Number of reads |
1,395.0 |
| Read length N50 |
3,339.0 |
| STDEV read length |
927.8 |
| Total bases |
4,409,908.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1395 (100.0%) 4.4Mb |
| >Q7 |
1395 (100.0%) 4.4Mb |
| >Q10 |
1298 (93.0%) 4.1Mb |
| >Q12 |
995 (71.3%) 3.2Mb |
| >Q15 |
63 (4.5%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (2313) |
| 2 |
16.3 (4923) |
| 3 |
16.1 (2966) |
| 4 |
16.0 (3440) |
| 5 |
15.8 (2910) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7160 (13.5) |
| 2 |
6990 (12.4) |
| 3 |
6943 (12.7) |
| 4 |
6800 (10.1) |
| 5 |
6753 (11.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot