Sample information

Sample ID ERR10960972
Sample Accession ERR10960972 Sequencing Platform OXFORD_NANOPORE Read Count 2024 Base Count 8882553
Bioproject ID PRJEB59568 Scientific Name lung metagenome
Read Length N50 4503 Reads < 1 kb (%) 0.000494071146245059
Sampling Context bronchoalveolar lavage fluid Host Health / Disease suspected lower respiratory infection
Study Title Feasibility and clinical impact of providing a daily respiratory metagenomic service for intensive care unit patients

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening

Not Available


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Genome Bin ID Quality Tier Completeness (%) Contamination (%) Genome Size (Mb) N50 (kb) Contig Count More Information GC Content (%) Taxonomy Closest Reference

Genome bin quality distribution

Phylogenomic tree of genome bins

Not Available


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling