NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,388.6 |
| Mean read quality |
11.7 |
| Median read length |
4,220.0 |
| Median read quality |
12.7 |
| Number of reads |
2,024.0 |
| Read length N50 |
4,503.0 |
| STDEV read length |
1,290.3 |
| Total bases |
8,882,553.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2024 (100.0%) 8.9Mb |
| >Q7 |
2024 (100.0%) 8.9Mb |
| >Q10 |
1912 (94.5%) 8.4Mb |
| >Q12 |
1340 (66.2%) 6.0Mb |
| >Q15 |
20 (1.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.8 (7904) |
| 2 |
15.6 (4460) |
| 3 |
15.5 (2395) |
| 4 |
15.5 (2844) |
| 5 |
15.5 (3263) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10874 (13.1) |
| 2 |
8838 (14.7) |
| 3 |
8819 (12.2) |
| 4 |
8804 (12.9) |
| 5 |
8803 (13.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot