The “general” mode, provides search for an overview of a gene expression across different organoids compared with other types of cell culture and primary tissue.
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“Organoid comparison” mode, shows comparison of gene expressions, pathways and cell type compositions in organoid samples to those in tissue, cell line, xenografts, etc, and compare organoids from different derivation sources or different protocols.
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Note: Only top 50,000 results sorted by P-value are shown.
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“Organoid development” mode, allows finding of development-correlated genes by calculating Spearman's correlation of gene expression as organoid cultures develop over time.
Parameters
Note: Only top 50,000 results sorted by P-value are shown.
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This mode will help identification of organoid specific genes in various organoid types. Organoid specificity was measured through comparison between the given organoid type and the remaining organoid types using differential expression analysis. Fold change and P-value were used to estimate the organoid specificity.
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This mode will help identification of tissue specific genes in various tissue types. Tissue specificity was measured through comparison between the given tissue type and the remaining tissue types using differential expression analysis. Fold change and P-value were used to estimate the tissue specificity.
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“Correlation analysis”, study gene-gene correlation across organoids or tissues.
Parameters
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