Sample information

Sample ID SRR9687648
Sample Accession SRR9687648 Sequencing Platform OXFORD_NANOPORE Read Count 406324 Base Count 839406640
Bioproject ID PRJNA554461 Scientific Name human lung metagenome
Read Length N50 2260 Reads < 1 kb (%) 0.0727178310904598
Sampling Context endotracheal aspirate Host Health / Disease pneumonia
Study Title Metagenomic Identification of Severe Pneumonia Pathogens in Mechanically-Ventilated Patients

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Genome Bin ID Quality Tier Completeness (%) Contamination (%) Genome Size (Mb) N50 (kb) Contig Count More Information GC Content (%) Taxonomy Closest Reference

Genome bin quality distribution

Phylogenomic tree of genome bins


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling