Sample information

Sample ID SRR8641382
Sample Accession SRR8641382 Sequencing Platform OXFORD_NANOPORE Read Count 3572987 Base Count 2237564921
Bioproject ID PRJNA524377 Scientific Name human sputum metagenome
Read Length N50 629 Reads < 1 kb (%) 0.904809897153278
Sampling Context sputum Host Health / Disease healthy
Study Title Clinical metagenomic approach for pathogen recovery from bronchoalveolar lavage using MinION

Sequencing quality control


Assembly-free analysis

Read-level taxonomic profiling

Gene screening


Assembly-based analysis

Assembly quality assessment

Genome-centric

Genome bin quality & Taxonomic assignment

Genome Bin ID Quality Tier Completeness (%) Contamination (%) Genome Size (Mb) N50 (kb) Contig Count More Information GC Content (%) Taxonomy Closest Reference

Genome bin quality distribution

Phylogenomic tree of genome bins


Gene-centric

Predicted ORF metrics

Gene-level taxonomic profiling