Single-cell overall analysis Disease information Differential genes Enriched regulations/functions/pathways Differential cell type markers Diseases with correlated signatures
Single-cell clustered analysis Cell clustering Marker genes Differential genes in clusters

Single-cell overall analysis

Disease information

Disease Name Chronic Atrophic Gastritis
Synonyms atrophic gastritis|chronic atrophic gastritis|gastric atrophy|gastritis, atrophic
Definition HPO: Atrophic gastritis (AG) is a histopathological entity that is characterized by chronic inflammation of the gastric mucosa with loss of gastric glandular cells and replacement by intestinal-type epithelium, pyloric-type glands, and fibrous tissue.
Organism Homo sapiens
Tissue Type Stomach
Pathogenic Factor pathological lesions:Chronic atrophic gastritis
Control | Case GSM3954946;GSM3954946;GSM3954946;GSM3954946;GSM3954947;GSM3954948;GSM3954948;GSM3954948;GSM3954948 GSM3954949;GSM3954949;GSM3954949;GSM3954949;GSM3954950;GSM3954950;GSM3954950;GSM3954950;GSM3954951
Data Source GEO
Accession GSE134520
Data Type scRNA-Seq
PubMed ID 31067475|33521016

Differential genes

Gene Name Log2FC Pct_Control Pct_Case P-value Adjusted P-value Regulation Boxplot

Volcano plot

Enriched regulations/functions/pathways


TF Regulation Gene Ratio Bg Ratio P-value Adjusted P-value Enriched Gene Enriched Gene Count

ID Terms Size ES NES P-value Adjusted P-value Plot

Differential cell type markers

Cell Type Source Regulation Gene Ratio Bg Ratio Hypergeometric P-value Adjusted P-value Marker Gene Marker Gene

Diseases with correlated signatures

DSAID Disease Enrichment Score P-value Organism +/- Analysis

Single-cell clustered analysis

Cell clustering

Cell ratio

Marker genes

Gene Name Log2FC Pct_Control Pct_Case P-value Adjusted P-value Cluster Violin plot

Differential genes in clusters

Gene Name Log2FC Pct_Control Pct_Case P-value Adjusted P-value Cluster Boxplot