NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
3,341.4 |
| Mean read quality |
14.0 |
| Median read length |
1,990.0 |
| Median read quality |
15.3 |
| Number of reads |
171,063.0 |
| Read length N50 |
6,244.0 |
| STDEV read length |
3,779.1 |
| Total bases |
571,590,968.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
171062 (100.0%) 571.6Mb |
| >Q7 |
171055 (100.0%) 571.6Mb |
| >Q10 |
169370 (99.0%) 565.9Mb |
| >Q12 |
156152 (91.3%) 534.7Mb |
| >Q15 |
94281 (55.1%) 363.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
37.5 (13) |
| 2 |
36.6 (44) |
| 3 |
36.3 (71) |
| 4 |
35.7 (28) |
| 5 |
34.7 (42) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54508 (10.8) |
| 2 |
52646 (10.3) |
| 3 |
45518 (10.6) |
| 4 |
42988 (10.1) |
| 5 |
40106 (16.1) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
3,341.5 |
| Mean read quality |
14.0 |
| Median read length |
1,990.0 |
| Median read quality |
15.3 |
| Number of reads |
171,060.0 |
| Read length N50 |
6,244.0 |
| STDEV read length |
3,779.1 |
| Total bases |
571,590,927.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
171059 (100.0%) 571.6Mb |
| >Q7 |
171052 (100.0%) 571.6Mb |
| >Q10 |
169367 (99.0%) 565.9Mb |
| >Q12 |
156149 (91.3%) 534.7Mb |
| >Q15 |
94278 (55.1%) 363.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
36.6 (44) |
| 2 |
36.3 (71) |
| 3 |
35.7 (28) |
| 4 |
34.7 (42) |
| 5 |
34.0 (29) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54508 (10.8) |
| 2 |
52646 (10.3) |
| 3 |
45518 (10.6) |
| 4 |
42988 (10.1) |
| 5 |
40106 (16.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot