NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
3,505.1 |
| Mean read quality |
14.3 |
| Median read length |
1,874.0 |
| Median read quality |
15.6 |
| Number of reads |
195,692.0 |
| Read length N50 |
7,108.0 |
| STDEV read length |
4,418.7 |
| Total bases |
685,918,579.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
195691 (100.0%) 685.9Mb |
| >Q7 |
195688 (100.0%) 685.9Mb |
| >Q10 |
193798 (99.0%) 677.6Mb |
| >Q12 |
179085 (91.5%) 638.6Mb |
| >Q15 |
117103 (59.8%) 461.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
37.8 (12) |
| 2 |
37.1 (29) |
| 3 |
35.5 (44) |
| 4 |
35.3 (51) |
| 5 |
35.2 (48) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58883 (14.4) |
| 2 |
56996 (11.0) |
| 3 |
52722 (12.5) |
| 4 |
51894 (15.7) |
| 5 |
51868 (10.6) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
3,505.1 |
| Mean read quality |
14.3 |
| Median read length |
1,874.0 |
| Median read quality |
15.6 |
| Number of reads |
195,690.0 |
| Read length N50 |
7,108.0 |
| STDEV read length |
4,418.7 |
| Total bases |
685,918,548.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
195689 (100.0%) 685.9Mb |
| >Q7 |
195686 (100.0%) 685.9Mb |
| >Q10 |
193796 (99.0%) 677.6Mb |
| >Q12 |
179083 (91.5%) 638.6Mb |
| >Q15 |
117101 (59.8%) 461.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
37.1 (29) |
| 2 |
35.5 (44) |
| 3 |
35.3 (51) |
| 4 |
35.2 (48) |
| 5 |
34.3 (173) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58883 (14.4) |
| 2 |
56996 (11.0) |
| 3 |
52722 (12.5) |
| 4 |
51894 (15.7) |
| 5 |
51868 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot