NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
3,022.1 |
| Mean read quality |
14.2 |
| Median read length |
1,852.0 |
| Median read quality |
15.4 |
| Number of reads |
474,636.0 |
| Read length N50 |
5,471.0 |
| STDEV read length |
3,350.0 |
| Total bases |
1,434,377,571.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
474636 (100.0%) 1434.4Mb |
| >Q7 |
474633 (100.0%) 1434.4Mb |
| >Q10 |
471300 (99.3%) 1423.4Mb |
| >Q12 |
438333 (92.4%) 1353.5Mb |
| >Q15 |
276140 (58.2%) 954.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
38.6 (25) |
| 2 |
37.3 (28) |
| 3 |
35.5 (70) |
| 4 |
35.5 (114) |
| 5 |
35.2 (151) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
64739 (16.0) |
| 2 |
51483 (18.5) |
| 3 |
46347 (11.0) |
| 4 |
44537 (11.0) |
| 5 |
43298 (11.4) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
3,022.1 |
| Mean read quality |
14.2 |
| Median read length |
1,852.0 |
| Median read quality |
15.4 |
| Number of reads |
474,633.0 |
| Read length N50 |
5,471.0 |
| STDEV read length |
3,350.0 |
| Total bases |
1,434,377,532.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
474633 (100.0%) 1434.4Mb |
| >Q7 |
474630 (100.0%) 1434.4Mb |
| >Q10 |
471297 (99.3%) 1423.4Mb |
| >Q12 |
438330 (92.4%) 1353.5Mb |
| >Q15 |
276137 (58.2%) 954.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
38.6 (25) |
| 2 |
37.3 (28) |
| 3 |
35.5 (70) |
| 4 |
35.5 (114) |
| 5 |
35.2 (151) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
64739 (16.0) |
| 2 |
51483 (18.5) |
| 3 |
46347 (11.0) |
| 4 |
44537 (11.0) |
| 5 |
43298 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot