NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,426.7 |
| Mean read quality |
14.7 |
| Median read length |
1,458.0 |
| Median read quality |
16.1 |
| Number of reads |
437,841.0 |
| Read length N50 |
4,440.0 |
| STDEV read length |
2,741.7 |
| Total bases |
1,062,504,507.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
437832 (100.0%) 1062.5Mb |
| >Q7 |
437780 (100.0%) 1062.5Mb |
| >Q10 |
434811 (99.3%) 1056.3Mb |
| >Q12 |
408251 (93.2%) 1012.3Mb |
| >Q15 |
295228 (67.4%) 816.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.1 (10) |
| 2 |
40.2 (2215) |
| 3 |
39.7 (105) |
| 4 |
39.3 (10) |
| 5 |
38.5 (10) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
37196 (15.7) |
| 2 |
32234 (15.6) |
| 3 |
32036 (17.1) |
| 4 |
31413 (16.1) |
| 5 |
31019 (17.8) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,426.7 |
| Mean read quality |
14.7 |
| Median read length |
1,458.0 |
| Median read quality |
16.1 |
| Number of reads |
437,836.0 |
| Read length N50 |
4,440.0 |
| STDEV read length |
2,741.7 |
| Total bases |
1,062,504,456.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
437827 (100.0%) 1062.5Mb |
| >Q7 |
437775 (100.0%) 1062.5Mb |
| >Q10 |
434806 (99.3%) 1056.3Mb |
| >Q12 |
408246 (93.2%) 1012.3Mb |
| >Q15 |
295223 (67.4%) 816.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.2 (2215) |
| 2 |
39.7 (105) |
| 3 |
38.4 (87) |
| 4 |
37.9 (171) |
| 5 |
37.6 (76) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
37196 (15.7) |
| 2 |
32234 (15.6) |
| 3 |
32036 (17.1) |
| 4 |
31413 (16.1) |
| 5 |
31019 (17.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot