NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,624.6 |
| Mean read quality |
14.7 |
| Median read length |
730.0 |
| Median read quality |
16.0 |
| Number of reads |
227,626.0 |
| Read length N50 |
3,610.0 |
| STDEV read length |
2,298.0 |
| Total bases |
369,799,843.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
227620 (100.0%) 369.8Mb |
| >Q7 |
227613 (100.0%) 369.8Mb |
| >Q10 |
226486 (99.5%) 367.5Mb |
| >Q12 |
211842 (93.1%) 350.5Mb |
| >Q15 |
145922 (64.1%) 274.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.4 (124) |
| 2 |
39.9 (158) |
| 3 |
39.8 (22) |
| 4 |
39.8 (26) |
| 5 |
39.3 (249) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
39426 (11.5) |
| 2 |
32496 (17.9) |
| 3 |
32199 (10.3) |
| 4 |
31361 (18.1) |
| 5 |
31203 (16.5) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,624.6 |
| Mean read quality |
14.7 |
| Median read length |
730.0 |
| Median read quality |
16.0 |
| Number of reads |
227,620.0 |
| Read length N50 |
3,610.0 |
| STDEV read length |
2,298.0 |
| Total bases |
369,799,766.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
227614 (100.0%) 369.8Mb |
| >Q7 |
227607 (100.0%) 369.8Mb |
| >Q10 |
226480 (99.5%) 367.5Mb |
| >Q12 |
211836 (93.1%) 350.5Mb |
| >Q15 |
145916 (64.1%) 274.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.4 (124) |
| 2 |
39.9 (158) |
| 3 |
39.8 (22) |
| 4 |
39.8 (26) |
| 5 |
39.3 (249) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
39426 (11.5) |
| 2 |
32496 (17.9) |
| 3 |
32199 (10.3) |
| 4 |
31361 (18.1) |
| 5 |
31203 (16.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot