NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,446.4 |
| Mean read quality |
14.8 |
| Median read length |
1,379.0 |
| Median read quality |
16.1 |
| Number of reads |
456,519.0 |
| Read length N50 |
4,742.0 |
| STDEV read length |
2,798.7 |
| Total bases |
1,116,840,630.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
456514 (100.0%) 1116.8Mb |
| >Q7 |
456497 (100.0%) 1116.8Mb |
| >Q10 |
454181 (99.5%) 1110.3Mb |
| >Q12 |
427895 (93.7%) 1062.0Mb |
| >Q15 |
306800 (67.2%) 847.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.6 (23) |
| 2 |
40.6 (90) |
| 3 |
40.0 (56) |
| 4 |
39.6 (33) |
| 5 |
39.6 (58) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
41246 (11.4) |
| 2 |
38810 (9.6) |
| 3 |
37315 (11.7) |
| 4 |
34657 (18.3) |
| 5 |
34333 (9.3) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,446.5 |
| Mean read quality |
14.8 |
| Median read length |
1,379.0 |
| Median read quality |
16.1 |
| Number of reads |
456,513.0 |
| Read length N50 |
4,742.0 |
| STDEV read length |
2,798.7 |
| Total bases |
1,116,840,520.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
456508 (100.0%) 1116.8Mb |
| >Q7 |
456491 (100.0%) 1116.8Mb |
| >Q10 |
454175 (99.5%) 1110.3Mb |
| >Q12 |
427889 (93.7%) 1062.0Mb |
| >Q15 |
306794 (67.2%) 847.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.6 (23) |
| 2 |
40.6 (90) |
| 3 |
40.0 (56) |
| 4 |
39.6 (33) |
| 5 |
39.6 (58) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
41246 (11.4) |
| 2 |
38810 (9.6) |
| 3 |
37315 (11.7) |
| 4 |
34657 (18.3) |
| 5 |
34333 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot